Storage resources in Grid'5000
This gives a broad view of the different storage resources that are available for experiments on Grid5000. The focus is on Big Data experiments. Advantages and disadvantages will be highlighted to help the user decide on the optimal combination of storage resources. This will help in two directions:
- It will help the user achieve better quality in experiments
- It will avoid excessive usage of any single type of resource by a user, thereby making them available mutually to other users of Grid'5000.
In Grid'5000, there are multiple resources for data storage in experiments. Each has its own characteristics, advantages and disadvantages. They are summarised in the table below. Further details are discussed in the following sub-sections.
Comparison table of storage resources
The following table summarises the comparison of different aspects of storage resources on Grid'5000 - both persistent and non-persistent types:
|Storage Resource||Data recoverability?||Protocol used||Persistence period||Provisioning mechanism||Network connectivity||Remarks|
|/home||No||NFS||long-term||Quota + User Acct mgmt||Variable (1Gb/s - 10 Gb/s)||Note-1|
|storage5k||No||NFS||medium-term||OAR||Variable (1Gb/s - 10 Gb/s)||Note-1|
|On node local disks reservation||No||-||medium-term||OAR||-||Note-2|
|Storage Array||No||NFS||long-term||Manual||10Gb/s inside LAN, 6Gb/s between storage array and server||Note-1|
|managed Ceph cluster||No||RADOS||medium-term||Temporarily free (until contention for space)||~n X 10 Gb/s (n = parallelism)||Note-3|
|deployed Ceph cluster||No||RADOS||non persistent||OAR||~n X 10 Gb/s||Note-3|
- Note-1: These storage resources use NFS accessed by multiple users. Hence, the performance is strongly dependent on the degree of contention during the time of experiment.
- Note-2: This storage uses the hard disks of the reserved node.
- Note-3: There are 2 factors to consider for performance:
- aggregated network bandwidth of all the nodes in the cluster:
- for the managed Ceph Cluster at rennes (4 nodes each with 1 network interface), n = 4,
- for the managed Ceph Cluster at nantes (3 nodes each with 1 network interface), n = 3,
- for deployed Ceph clusters, n = (number of nodes deployed - 2).
- the aggregated disk bandwidth of all Object Storage Devices (OSD) used in the cluster. The recommendation is to have 1 OSD per physical disk.
- aggregated network bandwidth of all the nodes in the cluster:
For further interesting details on maximum storage capacity and degree of parallelism in Ceph clusters, see this section.
This is the principal storage space when logged-in on a Grid'5000 site:
site:/home/userid. It is based on File System exposed by NFS. Each user has a quota of 25GB of storage on each site, with a reserve of 100GB. If required, the user can request to increase the size of the quota, using the account management interface.
This storage space is available under
/srv/osirim/<username> directory from frontends and nodes (in default environment or deployed -nfs and -big). It is provided by the OSIRIM project (IRIT lab) and exposed by NFS (using an autofs mount). Each user has a quota of 200GB of storage. If required, user can request to increase the size of the quota, by sending an email to firstname.lastname@example.org.
This is another shared storage resource offered on certain sites of Grid'5000 (e.g. rennes, nancy, lyon, sophia, luxembourg). Space on storage5k can be reserved in chunks of 10GB each, over weeks or months.
Advantages: Possibility of easy persistent storage over a series of experiments.
Disadvantage: The disadvantages are those of an NFS server with multiple simultaneous users. Also, this tool is not available from every Grid5000 site (see Storage5k for details)
On Node local disks reservation
Disk reservation consists in reserving local hard disks of nodes, in order to locally store large datasets between reservations, and thus avoid the need of moving data to nodes at the beginning of every node reservation. Disk reservation provides medium-term storage persistence.
Advantages: Storage is available directly on the hard disk of the reserved node.
Disadvantage: You need to reserve a hard disk on a node, and then reserve the same node for carrying out your experiment.
This is another shared resource that consists of a bay of RAID disks, located at the Rennes site, cumulatively offering ~180 TB of storage space. This is long-term persistent storage required over months (or the duration of a research project). Reservation is manual, it is not automatic. To reserve this resource, prospective users need to contact the Grid'5000 technical team (Email: email@example.com).
Advantages: Long-term dedicated storage over months. Hence, less time spent in marshalling datasets between experiments (to stay within your usage quotas).
Disadvantage: Those of an NFS server. Network latencies also need to be taken into account. Currently, the storage resources are based in rennes site. For experiments running at other sites, one needs to be aware that NFS handles poorly inter-site latencies.
Managed Ceph clusters
These are Object-based storage resources (i.e. not offering a File System interface). They are based in
rennes site (~9 TB) and at
nantes site (~7 TB). Hence, overall they aggregate to ~15 TB of storage resources. For details about Managed Ceph resources see here.
Advantages: Ceph is a distributed object storage system designed to provide excellent performance, reliability and scalability using multiple nodes.
Using Virtual Block Devices with managed Ceph backend: If experiments can support variable performances then the managed Ceph clusters offer additional persistent storage resources. They will be used in this tutorial also. Here is an example of using virtual block devices for creating a persistent Database service on a virtual machine.
Disadvantages: These are Object-based storage: hence non-accessible using direct Unix filesystem commands.
Dedicated storage on reserved nodes
This is storage that resides on nodes reserved for a single experiment. Hence, this is dedicated storage for an experiment. There is no contention from other users. It is not persistent storage. It is available as long as the node reservation lasts. Some clusters have nodes with multiple hard disks (HDD) and even SSD. In total, for each node, the number of disks can go up to 6 (e.g. cluster
parasilo in rennes), and their unit capacity can vary between 200 GB to 600 GB. This page gives the details of resources available.
Hence, by aggregating storage on a few nodes (6-10) it is possible to achieve easily ~20 TB of dedicated storage for an experiment.
Disadvantages: The primary disadvantage is that the storage is non-persistent. Hence, a clever mechanism has to be used for marshalling (copy-in and copy-out) datasets, before and after each experiment.